If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ), 'gf_id' => 'HOM05D000821', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000821' ), 'data_identifier' => 'HOM05D000821', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000821', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05150' => 'bna', 'A03p07480' => 'bna', 'A03p07490' => 'bna', 'A03p09180' => 'bna', 'A03p32940' => 'bna', 'A05p45220' => 'bna', 'A10p20740' => 'bna', 'A10p23110' => 'bna', 'Aa31LG11G10800' => 'aar', 'Aa31LG11G13640' => 'aar', 'Aa31LG11G13650' => 'aar', 'Aa31LG2G6740' => 'aar', 'Aa31LG2G6750' => 'aar', 'Aa31LG5G12970' => 'aar', 'Aa31LG7G8820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.397' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.875' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.908' => 'aag', 'Actinidia12361' => 'ach', 'Actinidia17626' => 'ach', 'Actinidia19892' => 'ach', 'Actinidia23459' => 'ach', 'Actinidia24035' => 'ach', 'Actinidia30172' => 'ach', 'Actinidia31914' => 'ach', 'Actinidia33304' => 'ach', 'Actinidia40214' => 'ach', 'Ah.02g127380' => 'amhyb', 'Ah.14g084320' => 'amhyb', 'Ah.14g084330' => 'amhyb', 'Ah.16g102110' => 'amhyb', 'AL1G54610' => 'aly', 'AL3G11790' => 'aly', 'AL3G28970' => 'aly', 'AL5G14040' => 'aly', 'AL6G26830' => 'aly', 'AL6G30280' => 'aly', 'Aqoxy2G03193' => 'aox', 'Aqoxy3G00617' => 'aox', 'Aqoxy5G00562' => 'aox', 'Aqoxy7G03268' => 'aox', 'Aqoxy7G03269' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0034KJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E9M75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H57DZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KG9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9P1DNG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX440W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F48FAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKDJ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5A4WZ' => 'arhy', 'AT3G02470' => 'ath', 'AT3G17717' => 'ath', 'AT3G25570' => 'ath', 'AT5G15950' => 'ath', 'AT5G18930' => 'ath', 'ATR0377G003' => 'atr', 'ATR0568G202' => 'atr', 'ATR0580G024' => 'atr', 'ATR0580G204' => 'atr', 'ATR0626G297' => 'atr', 'ATR0787G193' => 'atr', 'Atru.chr11.1454' => 'acertr', 'Atru.chr11.1484' => 'acertr', 'Atru.chr4.2697' => 'acertr', 'Atru.chr7.406' => 'acertr', 'Atru.chr8.733' => 'acertr', 'Atru.chr8.734' => 'acertr', 'AUR62007784' => 'cqu', 'AUR62025385' => 'cqu', 'AUR62027516' => 'cqu', 'AUR62028386' => 'cqu', 'AUR62028387' => 'cqu', 'AUR62039772' => 'cqu', 'BcaB01g04885' => 'bca', 'BcaB01g05011' => 'bca', 'BcaB01g05012' => 'bca', 'BcaB01g05013' => 'bca', 'BcaB01g05280' => 'bca', 'BcaB03g15415' => 'bca', 'BcaB04g20443' => 'bca', 'BcaB04g21409' => 'bca', 'BcaB05g23352' => 'bca', 'BcaB08g36635' => 'bca', 'BcaB08g36873' => 'bca', 'BcaC01g00326' => 'bca', 'BcaC01g04445' => 'bca', 'BcaC01g04446' => 'bca', 'BcaC01g04553' => 'bca', 'BcaC02g11753' => 'bca', 'BcaC03g13624' => 'bca', 'BcaC03g13625' => 'bca', 'BcaC04g18638' => 'bca', 'BcaC04g18921' => 'bca', 'BcaC04g18922' => 'bca', 'BcaC05g25596' => 'bca', 'BcaC05g26366' => 'bca', 'BcaC05g30356' => 'bca', 'BcaC05g30357' => 'bca', 'BcaC05g30359' => 'bca', 'BcaC05g30360' => 'bca', 'BcaC08g42943' => 'bca', 'BcaC09g47703' => 'bca', 'BcaC09g48735' => 'bca', 'BcaNung05736' => 'bca', 'BNapus_Darmor_BZH_scaffold_208p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00010' => 'bna', 'BolC1t04606H' => 'bol', 'BolC1t05902H' => 'bol', 'BolC2t06925H' => 'bol', 'BolC3t13368H' => 'bol', 'BolC3t13369H' => 'bol', 'BolC3t13547H' => 'bol', 'BolC3t16271H' => 'bol', 'BolC3t16272H' => 'bol', 'BolC4t22820H' => 'bol', 'BolC5t31135H' => 'bol', 'BolC5t35080H' => 'bol', 'BolC5t35081H' => 'bol', 'BolC6t35314H' => 'bol', 'BolC6t38460H' => 'bol', 'BolC9t58629H' => 'bol', 'BolC9t58954H' => 'bol', 'BraA02t05475Z' => 'bra', 'BraA03t10077Z' => 'bra', 'BraA03t10078Z' => 'bra', 'BraA03t10241Z' => 'bra', 'BraA03t12462Z' => 'bra', 'BraA05t20401Z' => 'bra', 'BraA05t23139Z' => 'bra', 'BraA09t40484Z' => 'bra', 'BraA10t44137Z' => 'bra', 'BraA10t44379Z' => 'bra', 'BraA10t44380Z' => 'bra', 'BraSC141t45632Z' => 'bra', 'C01p09590' => 'bna', 'C01p46450' => 'bna', 'C02p10220' => 'bna', 'C03p08680' => 'bna', 'C03p08690' => 'bna', 'C03p10710' => 'bna', 'C03p40060' => 'bna', 'C04p11730' => 'bna', 'C04p13000' => 'bna', 'C04p13050' => 'bna', 'C05p14360' => 'bna', 'C05p24080' => 'bna', 'C05p47820' => 'bna', 'C06p01860' => 'bna', 'C06p33460' => 'bna', 'C09p57600' => 'bna', 'C09p61110' => 'bna', 'C09p75720' => 'bna', 'CAN.G184.33' => 'can', 'CAN.G184.34' => 'can', 'CAN.G186.11' => 'can', 'CAN.G186.12' => 'can', 'CAN.G256.1' => 'can', 'CAN.G48.22' => 'can', 'CAN.G497.24' => 'can', 'CAN.G889.15' => 'can', 'CANSAT11G0941' => 'cansat', 'CANSAT64G2987' => 'cansat', 'CANSAT78G1226' => 'cansat', 'CARHR076440' => 'chi', 'CARHR076450' => 'chi', 'CARHR146500' => 'chi', 'CARHR194080' => 'chi', 'CARHR197350' => 'chi', 'CARHR197360' => 'chi', 'Carub.0003s0156' => 'cru', 'Carub.0003s0157' => 'cru', 'Carub.0005s0331' => 'cru', 'Carub.0005s0332' => 'cru', 'Carub.0006s1414' => 'cru', 'Carub.0006s1415' => 'cru', 'Carub.0006s1723' => 'cru', 'Ca_00593_v3' => 'car', 'Ca_02275_v3' => 'car', 'Ca_06718_v3' => 'car', 'Ca_21565_v3' => 'car', 'CBR_g72657' => 'cbr', 'Cc03_g02790' => 'ccan', 'Cc06_g14280' => 'ccan', 'Cc07_g04840' => 'ccan', 'Cc07_g04850' => 'ccan', 'Cc11_g11120' => 'ccan', 'Cc11_g11130' => 'ccan', 'CDE02G3392' => 'cde', 'CDE04G2169' => 'cde', 'CDE05G0614' => 'cde', 'CDE07G0496' => 'cde', 'CDE07G1427' => 'cde', 'Cfa003653' => 'cfa', 'Cfa007993' => 'cfa', 'Cfa010145' => 'cfa', 'Cfa010146' => 'cfa', 'Cfa010147' => 'cfa', 'Cfa015543' => 'cfa', 'Cfa019295' => 'cfa', 'Cfa020767' => 'cfa', 'Cfa023820' => 'cfa', 'Ciclev10005303m.g' => 'ccl', 'Ciclev10010502m.g' => 'ccl', 'Ciclev10010716m.g' => 'ccl', 'Ciclev10013834m.g' => 'ccl', 'Ciclev10013866m.g' => 'ccl', 'Ciclev10033607m.g' => 'ccl', 'CiPaw.01G157000' => 'cil', 'CiPaw.02G089800' => 'cil', 'CiPaw.03G007300' => 'cil', 'CiPaw.03G007400' => 'cil', 'CiPaw.04G005200' => 'cil', 'CiPaw.04G005300' => 'cil', 'CiPaw.06G097000' => 'cil', 'CiPaw.06G097100' => 'cil', 'CiPaw.15G163200' => 'cil', 'CiPaw.15G163300' => 'cil', 'ClCG05G011880' => 'cla', 'ClCG06G005640' => 'cla', 'ClCG11G012720' => 'cla', 'COL.COLO4_13975' => 'col', 'COL.COLO4_27733' => 'col', 'COL.COLO4_37043' => 'col', 'Cpa.g.sc16.64' => 'cpa', 'Cpa.g.sc53.15' => 'cpa', 'Cpa.g.sc53.16' => 'cpa', 'Cpa.g.sc70.16' => 'cpa', 'Cpa.g.sc70.17' => 'cpa', 'Cpa.g.sc718.1' => 'cpa', 'Cpa.g.sc718.2' => 'cpa', 'Cre03.g205900' => 'cre', 'CsaV3_2G007750' => 'csa', 'CsaV3_2G007760' => 'csa', 'CsaV3_3G013880' => 'csa', 'CsaV3_3G020550' => 'csa', 'CsaV3_3G020560' => 'csa', 'CsaV3_6G005510' => 'csa', 'CSS0007338' => 'camsi', 'CSS0008138' => 'camsi', 'CSS0010476' => 'camsi', 'CSS0017887' => 'camsi', 'CSS0023428' => 'camsi', 'CSS0024970' => 'camsi', 'CSS0025095' => 'camsi', 'CSS0034452' => 'camsi', 'CSS0036483' => 'camsi', 'CSS0036603' => 'camsi', 'CSS0038371' => 'camsi', 'CSS0040035' => 'camsi', 'CSS0041318' => 'camsi', 'DCAR_007213' => 'dca', 'DCAR_007531' => 'dca', 'DCAR_020093' => 'dca', 'DCAR_023723' => 'dca', 'DCAR_026286' => 'dca', 'DCAR_027136' => 'dca', 'DCAR_030581' => 'dca', 'Dinv16561' => 'din', 'Dinv27409' => 'din', 'Dinv27410' => 'din', 'Dinv33897' => 'din', 'Dinv33898' => 'din', 'Dinv34877' => 'din', 'Dinv38355' => 'din', 'Dinv42806' => 'din', 'Dinv43295' => 'din', 'Dinv44459' => 'din', 'Duzib052G0425' => 'dzi', 'Duzib052G0620' => 'dzi', 'Duzib138G1693' => 'dzi', 'Duzib150G0377' => 'dzi', 'Duzib151G0150' => 'dzi', 'Duzib168G0400' => 'dzi', 'Duzib212G0368' => 'dzi', 'Duzib248G0536' => 'dzi', 'Duzib251G0652' => 'dzi', 'ECA233G2532' => 'eca', 'ECA233G3170' => 'eca', 'ECA233G4766' => 'eca', 'ECA238G2093' => 'eca', 'ECA246G4504' => 'eca', 'EL10Ac2g04650' => 'bvu', 'EL10Ac6g14587' => 'bvu', 'EL10Ac8g18892' => 'bvu', 'EL10Ac8g18893' => 'bvu', 'Eucgr.B01190' => 'egr', 'Eucgr.B03086' => 'egr', 'Eucgr.C00232' => 'egr', 'Eucgr.H03638' => 'egr', 'Eucgr.J01447' => 'egr', 'Eucgr.J01448' => 'egr', 'FAN02G3078' => 'fan', 'FAN05G4080' => 'fan', 'FAN07G0329' => 'fan', 'FAN07G2258' => 'fan', 'FAN09G0163' => 'fan', 'FAN12G2142' => 'fan', 'FAN12G2283' => 'fan', 'FAN14G4322' => 'fan', 'FAN17G0115' => 'fan', 'FAN17G0857' => 'fan', 'FAN22G0232' => 'fan', 'FAN22G2106' => 'fan', 'FvH4_4g13980' => 'fve', 'FvH4_4g28640' => 'fve', 'FvH4_4g28650' => 'fve', 'FvH4_6g10680' => 'fve', 'FvH4_6g45760' => 'fve', 'Glyma.01G071300' => 'gma', 'Glyma.01G071400' => 'gma', 'Glyma.02G128000' => 'gma', 'Glyma.02G128100' => 'gma', 'Glyma.07G254000' => 'gma', 'Glyma.08G255800' => 'gma', 'Glyma.08G255850' => 'gma', 'Glyma.13G211700' => 'gma', 'Glyma.15G101000' => 'gma', 'Glyma.17G020300' => 'gma', 'Glyma.17G070500' => 'gma', 'Glyma.18G278800' => 'gma', 'Glyma.18G278850' => 'gma', 'Gohir.A02G044600' => 'ghi', 'Gohir.A03G108133' => 'ghi', 'Gohir.A03G108166' => 'ghi', 'Gohir.A05G007400' => 'ghi', 'Gohir.A05G007500' => 'ghi', 'Gohir.A08G035700' => 'ghi', 'Gohir.A08G035800' => 'ghi', 'Gohir.A09G231800' => 'ghi', 'Gohir.A10G106000' => 'ghi', 'Gohir.A13G095100' => 'ghi', 'Gohir.A13G095200' => 'ghi', 'Gohir.D02G050500' => 'ghi', 'Gohir.D02G133200' => 'ghi', 'Gohir.D02G133300' => 'ghi', 'Gohir.D05G008300' => 'ghi', 'Gohir.D05G008400' => 'ghi', 'Gohir.D08G046400' => 'ghi', 'Gohir.D08G046500' => 'ghi', 'Gohir.D09G232900' => 'ghi', 'Gohir.D10G162166' => 'ghi', 'Gohir.D13G089300' => 'ghi', 'Gohir.D13G089400' => 'ghi', 'Gorai.004G045700' => 'gra', 'Gorai.005G055800' => 'gra', 'Gorai.005G149100' => 'gra', 'Gorai.005G149200' => 'gra', 'Gorai.006G255800' => 'gra', 'Gorai.009G008500' => 'gra', 'Gorai.011G181300' => 'gra', 'Gorai.013G102500' => 'gra', 'GSVIVG01017856001' => 'vvi', 'GSVIVG01023708001' => 'vvi', 'GSVIVG01036490001' => 'vvi', 'HanXRQChr07g0192661' => 'han', 'HanXRQChr08g0214651' => 'han', 'HanXRQChr08g0226471' => 'han', 'HanXRQChr12g0365201' => 'han', 'HanXRQChr14g0448031' => 'han', 'HanXRQChr15g0472831' => 'han', 'Haze_01005' => 'cav', 'Haze_11816' => 'cav', 'Haze_11826' => 'cav', 'Haze_14083' => 'cav', 'Haze_19064' => 'cav', 'Haze_19065' => 'cav', 'Haze_19070' => 'cav', 'Haze_19071' => 'cav', 'Haze_27014' => 'cav', 'Hma1.2p1_0189F.1_g082770' => 'hma', 'Hma1.2p1_1084F.1_g255390' => 'hma', 'Hma1.2p1_1424F.1_g282790' => 'hma', 'Hma1.2p1_1793F.1_g302650' => 'hma', 'HPP92_011803' => 'vpl', 'HPP92_013656' => 'vpl', 'HPP92_013674' => 'vpl', 'HPP92_018338' => 'vpl', 'HPP92_018339' => 'vpl', 'HPP92_018538' => 'vpl', 'HPP92_018539' => 'vpl', 'HPP92_018542' => 'vpl', 'Hund05793' => 'sun', 'Hund25122' => 'sun', 'Hund26423' => 'sun', 'Lalb_Chr04g0255261' => 'lal', 'Lalb_Chr04g0255271' => 'lal', 'Lalb_Chr10g0099461' => 'lal', 'Lalb_Chr10g0099471' => 'lal', 'Lalb_Chr12g0196351' => 'lal', 'Lalb_Chr13g0304011' => 'lal', 'Lalb_Chr15g0087221' => 'lal', 'Lalb_Chr17g0336661' => 'lal', 'Lalb_Chr17g0336671' => 'lal', 'Lalb_Chr17g0341701' => 'lal', 'Lalb_Chr17g0341711' => 'lal', 'Lalb_Chr21g0318051' => 'lal', 'Lalb_Chr21g0318061' => 'lal', 'Lj1g0019318' => 'lja', 'Lj1g0021287' => 'lja', 'Lj2g0000747' => 'lja', 'Lj2g0017656' => 'lja', 'Lj3C1023T7' => 'lonja', 'Lj3P805T26' => 'lonja', 'Lj4C128G17' => 'lonja', 'Lj4C128T16' => 'lonja', 'Lj4g0009301' => 'lja', 'Lj4g0024008' => 'lja', 'Lj6C770T4' => 'lonja', 'Lj6g0011598' => 'lja', 'Lj6g0024309' => 'lja', 'Lj6P665T30' => 'lonja', 'Lj7C7T6' => 'lonja', 'Lj9A723T42' => 'lonja', 'Lj9A724T30' => 'lonja', 'Lj9C723T13' => 'lonja', 'Lju237C1T15' => 'lonja', 'Lju237C1T16' => 'lonja', 'Lsat_1_v5_gn_2_86141' => 'lsa', 'Lsat_1_v5_gn_3_95801' => 'lsa', 'Lsat_1_v5_gn_6_14420' => 'lsa', 'Lsat_1_v5_gn_6_14941' => 'lsa', 'Lsat_1_v5_gn_8_37801' => 'lsa', 'Manes.01G106600' => 'mes', 'Manes.01G106700' => 'mes', 'Manes.02G063500' => 'mes', 'Manes.02G063600' => 'mes', 'Manes.03G187700' => 'mes', 'Manes.06G077000' => 'mes', 'Manes.14G094000' => 'mes', 'Manes.14G094100' => 'mes', 'Manes.14G114100' => 'mes', 'Manes.14G114200' => 'mes', 'Manes.15G020400' => 'mes', 'Mapoly0001s0544' => 'mpo', 'Mapoly0102s0030' => 'mpo', 'MBI14_g04840_MAGBIO' => 'mbi', 'MBI14_g36371_MAGBIO' => 'mbi', 'MBI15_g07488_MAGBIO' => 'mbi', 'MBI15_g38435_MAGBIO' => 'mbi', 'MBI17_g12082_MAGBIO' => 'mbi', 'MD09G1079800' => 'mdo', 'MD09G1079900' => 'mdo', 'MD13G1052600' => 'mdo', 'MD13G1178800' => 'mdo', 'MD16G1057400' => 'mdo', 'MD16G1180000' => 'mdo', 'MD17G1070300' => 'mdo', 'MD17G1070400' => 'mdo', 'Medtr0003s0660' => 'mtr', 'Medtr0076s0010' => 'mtr', 'Medtr0076s0020' => 'mtr', 'Medtr2g020990' => 'mtr', 'Medtr4g118320' => 'mtr', 'Medtr7g018290' => 'mtr', 'Medtr7g018310' => 'mtr', 'Medtr7g018320' => 'mtr', 'Medtr8g069905' => 'mtr', 'MELO3C004110.2' => 'cme', 'MELO3C006580.2' => 'cme', 'MELO3C021386.2' => 'cme', 'MELO3C023786.2' => 'cme', 'MELO3C023787.2' => 'cme', 'Migut.H00558' => 'egut', 'Migut.H00559' => 'egut', 'Migut.J01401' => 'egut', 'Migut.L01128' => 'egut', 'Migut.L01129' => 'egut', 'Migut.N00137' => 'egut', 'MSTRG.10026' => 'ama', 'MSTRG.22151' => 'ama', 'MSTRG.23841' => 'ama', 'MSTRG.2954' => 'ama', 'MSTRG.3387' => 'ama', 'MSTRG.799' => 'ama', 'Nitab4.5_0000059g0160' => 'nta', 'Nitab4.5_0000259g0260' => 'nta', 'Nitab4.5_0000894g0070' => 'nta', 'Nitab4.5_0001036g0070' => 'nta', 'Nitab4.5_0001196g0090' => 'nta', 'Nitab4.5_0001554g0080' => 'nta', 'Nitab4.5_0001965g0070' => 'nta', 'Nitab4.5_0001982g0050' => 'nta', 'Nitab4.5_0002295g0040' => 'nta', 'Nitab4.5_0002594g0050' => 'nta', 'Nitab4.5_0004508g0030' => 'nta', 'Nitab4.5_0004508g0040' => 'nta', 'Nitab4.5_0004681g0030' => 'nta', 'Nitab4.5_0006224g0030' => 'nta', 'Nitab4.5_0008122g0010' => 'nta', 'Nitab4.5_0013699g0010' => 'nta', 'Nitab4.5_0013699g0020' => 'nta', 'Nitab4.5_0022449g0010' => 'nta', 'Nn1g02112' => 'nnu', 'Nn2g12501' => 'nnu', 'Nn2g12502' => 'nnu', 'Nn3g16425' => 'nnu', 'Nn3g17612' => 'nnu', 'Nn4g23619' => 'nnu', 'Nn4g23620' => 'nnu', 'Nn4g26128' => 'nnu', 'Nn5g26862' => 'nnu', 'Nn8g40172' => 'nnu', 'Oeu024759.1' => 'oeu', 'Oeu027423.1' => 'oeu', 'Oeu031387.1' => 'oeu', 'Oeu031859.1' => 'oeu', 'Oeu032697.1' => 'oeu', 'Oeu032698.1' => 'oeu', 'Oeu032859.2' => 'oeu', 'Oeu041853.1' => 'oeu', 'Oeu045628.1' => 'oeu', 'Oeu049337.1' => 'oeu', 'Oeu054563.1' => 'oeu', 'Oeu055838.1' => 'oeu', 'Oeu055839.1' => 'oeu', 'Oeu059111.3' => 'oeu', 'Os02g0611200' => 'osa', 'Os04g0498600' => 'osa', 'Os05g0141800' => 'osa', 'Os09g0424300' => 'osa', 'Peaxi162Scf00026g00023' => 'pax', 'Peaxi162Scf00038g00043' => 'pax', 'Peaxi162Scf00095g00056' => 'pax', 'Peaxi162Scf00188g00043' => 'pax', 'Peaxi162Scf00769g00011' => 'pax', 'Peaxi162Scf01056g00028' => 'pax', 'PGR004G1288' => 'pgr', 'PGR042G1194' => 'pgr', 'PGR102G0447' => 'pgr', 'PGR102G1751' => 'pgr', 'PGR102G3317' => 'pgr', 'PGR142G0720' => 'pgr', 'PGSC0003DMG400007518' => 'stu', 'PGSC0003DMG400010051' => 'stu', 'PGSC0003DMG400016009' => 'stu', 'PGSC0003DMG400030766' => 'stu', 'PGSC0003DMG400032117' => 'stu', 'Phvul.003G044200' => 'pvu', 'Phvul.003G044300' => 'pvu', 'Phvul.003G097900' => 'pvu', 'Phvul.006G157800' => 'pvu', 'Phvul.008G022100' => 'pvu', 'Phvul.008G022200' => 'pvu', 'Potri.004G106750' => 'ptr', 'Potri.004G106800' => 'ptr', 'Potri.008G198800' => 'ptr', 'Potri.010G028500' => 'ptr', 'Potri.010G133850' => 'ptr', 'Potri.010G133900' => 'ptr', 'Potri.017G108800' => 'ptr', 'Potri.017G108901' => 'ptr', 'Potri.018G101400' => 'ptr', 'Potri.018G101500' => 'ptr', 'Pp3c15_18500' => 'ppa', 'Pp3c15_18510' => 'ppa', 'Pp3c15_18520' => 'ppa', 'Pp3c20_3610' => 'ppa', 'Pp3c23_21570' => 'ppa', 'Pp3c9_12070' => 'ppa', 'Pp3c9_12120' => 'ppa', 'Prupe.1G147600' => 'ppe', 'Prupe.1G299500' => 'ppe', 'Prupe.1G299600' => 'ppe', 'Prupe.3G243800' => 'ppe', 'Prupe.3G243900' => 'ppe', 'Psat0ss7919g0080' => 'psa', 'Psat1g185360' => 'psa', 'Psat2g096400' => 'psa', 'Psat3g192400' => 'psa', 'Psat3g192480' => 'psa', 'Psat4g045880' => 'psa', 'Psat4g113240' => 'psa', 'Psat5g221240' => 'psa', 'Psat7g111600' => 'psa', 'Psat7g111640' => 'psa', 'Psat7g237560' => 'psa', 'Psat7g237600' => 'psa', 'Psat7g244360' => 'psa', 'PSO017G7076' => 'pso', 'PSO063G0195' => 'pso', 'PSO063G7241' => 'pso', 'PSO170G3650' => 'pso', 'PSO170G6869' => 'pso', 'PSO302G0302' => 'pso', 'PSO782G4157' => 'pso', 'PSO782G4241' => 'pso', 'QL02p054330' => 'qlo', 'QL02p094421' => 'qlo', 'QL06p006146' => 'qlo', 'QL06p007163' => 'qlo', 'RcHm_v2.0_Chr1g0350481' => 'rch', 'RcHm_v2.0_Chr2g0163951' => 'rch', 'RcHm_v2.0_Chr2g0163961' => 'rch', 'RcHm_v2.0_Chr4g0408541' => 'rch', 'RcHm_v2.0_Chr4g0419671' => 'rch', 'RcHm_v2.0_Chr4g0420801' => 'rch', 'RcHm_v2.0_Chr4g0436751' => 'rch', 'RcHm_v2.0_Chr4g0436761' => 'rch', 'RcHm_v2.0_Chr7g0221071' => 'rch', 'Rhsim01G0021000' => 'rsi', 'Rhsim01G0021100' => 'rsi', 'Rhsim04G0212300' => 'rsi', 'Rhsim08G0081000' => 'rsi', 'Rhsim10G0062600' => 'rsi', 'Rhsim12G0066600' => 'rsi', 'RhsimUnG0185200' => 'rsi', 'Sabra04G0075200' => 'sbr', 'Sabra08G0161800' => 'sbr', 'Sabra10G0012400' => 'sbr', 'Sabra10G0102700' => 'sbr', 'Sabra17G0091300' => 'sbr', 'Sabra17G0091400' => 'sbr', 'Sabra18G0087300' => 'sbr', 'SalBow1G0065' => 'sbo', 'SalBow1G0825' => 'sbo', 'SalBow1G6886' => 'sbo', 'SalBow2G2413' => 'sbo', 'SalBow8G0588' => 'sbo', 'SalBow8G4660' => 'sbo', 'Sc04g0007080' => 'sci', 'Sc10g0001480' => 'sci', 'Sc11g0002860' => 'sci', 'Sc15g0002360' => 'sci', 'Sc19g0004740' => 'sci', 'Sed0003314' => 'sed', 'Sed0007821' => 'sed', 'Sed0008792' => 'sed', 'Sed0009118' => 'sed', 'Sed0014001' => 'sed', 'Sed0014570' => 'sed', 'Sed0015401' => 'sed', 'SEGI_13469' => 'sgi', 'SEGI_17126' => 'sgi', 'SEGI_30772' => 'sgi', 'SEGI_31803' => 'sgi', 'SGA_v2.0_scaffold107G30748' => 'sas', 'SGA_v2.0_scaffold142G35631' => 'sas', 'SGA_v2.0_scaffold14G06782' => 'sas', 'SGA_v2.0_scaffold16G07853' => 'sas', 'SGA_v2.0_scaffold52G19030' => 'sas', 'SGA_v2.0_scaffold89G27582' => 'sas', 'SHI00351' => 'shi', 'SHI33681' => 'shi', 'SHI33682' => 'shi', 'SMO144G0021' => 'smo', 'SMO169G0271' => 'smo', 'SMO171G0081' => 'smo', 'SMO171G0109' => 'smo', 'Solyc01g010050.3' => 'sly', 'Solyc01g080380.4' => 'sly', 'Solyc02g089610.2' => 'sly', 'Solyc02g150147.1' => 'sly', 'Solyc05g010420.2' => 'sly', 'Solyc05g010425.1' => 'sly', 'Solyc06g054460.1' => 'sly', 'Sopen01g005600' => 'spe', 'Sopen01g032190' => 'spe', 'Sopen02g034330' => 'spe', 'Sopen05g006210' => 'spe', 'Sopen06g019530' => 'spe', 'Sp2g14830' => 'spa', 'Sp3g01490' => 'spa', 'Sp6g25460' => 'spa', 'Sp6g28160' => 'spa', 'TAR362G0896' => 'tar', 'TAR365G0850' => 'tar', 'TAR374G0986' => 'tar', 'TAR383G0646' => 'tar', 'TAR383G0730' => 'tar', 'TAR622G0438' => 'tar', 'TAR622G0670' => 'tar', 'TAR626G0732' => 'tar', 'TAR626G1302' => 'tar', 'TAR636G0785' => 'tar', 'THA.LOC104802737' => 'tha', 'THA.LOC104802999' => 'tha', 'THA.LOC104805231' => 'tha', 'THA.LOC104818828' => 'tha', 'Thecc.02G316800' => 'tca', 'Thecc.02G316900' => 'tca', 'Thecc.04G145800' => 'tca', 'Thecc.04G271800' => 'tca', 'Thecc.09G155500' => 'tca', 'Thecc.09G155600' => 'tca', 'Thhalv10004463m.g' => 'esa', 'Thhalv10013987m.g' => 'esa', 'Thhalv10015260m.g' => 'esa', 'Thhalv10015839m.g' => 'esa', 'Thhalv10022357m.g' => 'esa', 'TPR.G24820' => 'tpr', 'TPR.G2654' => 'tpr', 'TPR.G28127' => 'tpr', 'TPR.G3281' => 'tpr', 'TPR.G39' => 'tpr', 'TWI09G0640' => 'twi', 'TWI32G0656' => 'twi', 'TWI34G0974' => 'twi', 'TWI34G1857' => 'twi', 'TWI73G0739' => 'twi', 'TWI79G1682' => 'twi', 'unitig_22.g6538' => 'ugi', 'unitig_22.g6888' => 'ugi', 'unitig_52.g17627' => 'ugi', 'unitig_736.g22499' => 'ugi', 'unitig_8.g3213' => 'ugi', 'unitig_8.g3214' => 'ugi', 'vmacro01279' => 'vma', 'vmacro05595' => 'vma', 'vmacro08245' => 'vma', 'vmacro13068' => 'vma', 'vmacro18091' => 'vma', 'vmacro18092' => 'vma', 'VMungo0540G0080' => 'vmu', 'VMungo1215G2177' => 'vmu', 'VMungo1215G3225' => 'vmu', 'VMungo1309G2320' => 'vmu', 'Zm00001eb078440' => 'zma', 'Zm00001eb184470' => 'zma', 'Zm00001eb313390' => 'zma', 'Zm00001eb313400' => 'zma', 'Zm00001eb313410' => 'zma', 'Zm00001eb400700' => 'zma', 'Zm00001eb425830' => 'zma' ) $gf_id = 'HOM05D000821' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000821' ) $data_identifier = 'HOM05D000821' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 31, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 12, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 6, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 12, 'lsa' => (int) 5, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 10, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425830' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1